by Biostatsquid | Sep 24, 2023 | Learning, Statistics
Confidence intervals, confidence level and p-values simply explained! Let’s talk about p-values and confidence intervals! They’re very common statistical terms, and I thought I had a clear understanding of what both are, but turns out that language can be...
by Biostatsquid | Sep 4, 2023 | scRNAseq, Statistics in R, Tutorials
A step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgsea In this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using R-package fgsea. This package implements an algorithm for fast gene set enrichment...
by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials
A step-by-step R tutorial on performing pathway enrichment analysis with clusterProfiler in R Note! This is an updated version of ORA analysis with clusterProfiler which doesn’t correspond exactly to the video tutorial! Click here for the old version. Table of...
by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials
A step-by-step R tutorial on visualising pathway enrichment analysis results with clusterProfiler Table of contents 5 Before you start 5 Step-by-step tutorial 9 Creating an enrichResult object 9 Barplots 9 Dotplots 9 Cnetplot 9 Heatplot 9 Treeplot 9 Enrichment map 9...
by Biostatsquid | May 20, 2023 | Tutorials, Visualisation
R TUTORIAL: Follow this step-by-step heatmap tutorial with pheatmap() to visualise your differential gene expression results in R Table of contents 5 Before you start 5 Heatmaps with pheatmap(): complete script 5 Step-by-step guide to create annotated heatmaps in R 9...
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