by Biostatsquid | Jun 6, 2025 | Learning, Statistics, Statistics in R, Tutorials
When working with biological data, we often want to compare measurements across multiple groups. However, these measurements aren’t always normally distributed. In such cases, non-parametric methods like the Kruskal-Wallis test and Dunn’s post-hoc test are ideal...
by Biostatsquid | May 5, 2025 | scRNAseq, Tutorials
A step-by-step easy R tutorial to preprocess scRNAseq data with Seurat v5 In this easy, step-by-step tutorial you will learn how a Seurat object is structured and how to preprocess scRNAseq data using the standard workflow with Seurat v5. This is a hands-on...
by Biostatsquid | Aug 25, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets from scRNAseq data In this easy, step-by-step tutorial you will learn how to do some general doublet QC and remove doublets from our Seurat object in R for scRNAseq data. This is part 3 of my tutorial series...
by Biostatsquid | Aug 18, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets using DoubletFinder in R In this easy, step-by-step tutorial you will learn how to detect and remove doublets from scRNAseq data in R, using the R package DoubletFinder. First things first. What are...
by Biostatsquid | Aug 18, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets using scDblFinder in R In this easy, step-by-step scDblFinder tutorial you will learn how to detect and remove doublets from scRNAseq data in R, using the R package (you guessed it!) scDblFinder . First...
by Biostatsquid | Jun 20, 2024 | Tutorials, Visualisation
A step-by-step easy R tutorial to create and customise violin plots with ggplot2 In this easy, step-by-step tutorial you will learn how to create your own violin plots in R, including how to customise the colours, layout, create grouped violin plots, and more! If you...
