biostatsquid.com
  • BiostatSQUID
  • BiostatLEARN
  • BiostatCODE
  • BiostatTOOLS
  • FAQ
  • Contact
  • About me
Select Page
Easy Gene Set Enrichment Analysis in R with fgsea()

Easy Gene Set Enrichment Analysis in R with fgsea()

by Biostatsquid | Sep 4, 2023 | scRNAseq, Statistics in R, Tutorials

A step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgsea In this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using R-package fgsea. This package implements an algorithm for fast gene set enrichment...
Pathway Enrichment Analysis with clusterProfiler

Pathway Enrichment Analysis with clusterProfiler

by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials

A step-by-step R tutorial on performing pathway enrichment analysis with clusterProfiler in R Note! This is an updated version of ORA analysis with clusterProfiler which doesn’t correspond exactly to the video tutorial! Click here for the old version. Table of...
Easy R tutorial: pathway enrichment analysis plots

Easy R tutorial: pathway enrichment analysis plots

by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials

A step-by-step R tutorial on visualising pathway enrichment analysis results with clusterProfiler Table of contents 5 Before you start 5 Step-by-step tutorial 9 Creating an enrichResult object 9 Barplots 9 Dotplots 9 Cnetplot 9 Heatplot 9 Treeplot 9 Enrichment map 9...
Standard scRNAseq pre-processing workflow with Seurat

Standard scRNAseq pre-processing workflow with Seurat

by Biostatsquid | Jan 10, 2023 | scRNAseq, Tutorials

R TUTORIAL: Pre-process your scRNAseq data with this easy, step-by-step pipeline Table of contents 5 Before you start 5 scRNAseq pre-processing pipeline: complete script 5 Step-by-step guide to analyse your data with Seurat 9 Step 1: Set up your script 9 Step 2:...
Next Entries »
  • YouTube
  • GitHub
  • Instagram
  • LinkedIn
If you’d like to support my work or say thanks…

Buy Me a Coffee

Popular Posts

  • Top gene expression analysis tools you should know as a bioinformatician
  • Survival time analysis: easily explained!
  • Correlation does not imply causation
  • Easy DoubletFinder tutorial in R
  • Easy survival analysis in R

Recent posts

  • Pathway Enrichment Analysis with clusterProfiler (old version)
  • Easy gene set enrichment analysis with fgsea (old version)
  • How to choose log2FC thresholds for DGE analysis
  • Comparing multiple groups: Kruskal-Wallis test in R
  • Introduction to single-cell analysis with Seurat v5
      • BiostatSQUID
      • BiostatLEARN
      • BiostatCODE
      • BiostatTOOLS
      • FAQ
      • Contact
      • About me