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Pathway Enrichment Analysis with clusterProfiler

Pathway Enrichment Analysis with clusterProfiler

by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials

A step-by-step R tutorial on performing pathway enrichment analysis with clusterProfiler in R Note! This is an updated version of ORA analysis with clusterProfiler which doesn’t correspond exactly to the video tutorial! Click here for the old version. Table of...
Easy R tutorial: pathway enrichment analysis plots

Easy R tutorial: pathway enrichment analysis plots

by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials

A step-by-step R tutorial on visualising pathway enrichment analysis results with clusterProfiler Table of contents 5 Before you start 5 Step-by-step tutorial 9 Creating an enrichResult object 9 Barplots 9 Dotplots 9 Cnetplot 9 Heatplot 9 Treeplot 9 Enrichment map 9...
Step-by-step heatmap tutorial with pheatmap()

Step-by-step heatmap tutorial with pheatmap()

by Biostatsquid | May 20, 2023 | Tutorials, Visualisation

R TUTORIAL: Follow this step-by-step heatmap tutorial with pheatmap() to visualise your differential gene expression results in R Table of contents 5 Before you start 5 Heatmaps with pheatmap(): complete script 5 Step-by-step guide to create annotated heatmaps in R 9...
Quality Check, Processing and Alignment of Sequencing Reads R tutorial

Quality Check, Processing and Alignment of Sequencing Reads R tutorial

by Biostatsquid | Feb 8, 2023 | Tutorials

R TUTORIAL: From .fastq to .bam, preprocess and align your sequencing reads with this step-by-step sequencing reads R tutorial Table of contents 5 Before you start 5 Sequencing reads processing pipeline: complete script 5 Step-by-step guide for sequencing read...
Standard scRNAseq pre-processing workflow with Seurat

Standard scRNAseq pre-processing workflow with Seurat

by Biostatsquid | Jan 10, 2023 | scRNAseq, Tutorials

R TUTORIAL: Pre-process your scRNAseq data with this easy, step-by-step pipeline Table of contents 5 Before you start 5 scRNAseq pre-processing pipeline: complete script 5 Step-by-step guide to analyse your data with Seurat 9 Step 1: Set up your script 9 Step 2:...
Volcano plots in R: easy step-by-step tutorial

Volcano plots in R: easy step-by-step tutorial

by Biostatsquid | Nov 8, 2022 | Tutorials, Visualisation

R TUTORIAL: Create your own volcano plot in R in 5 simple steps Table of contents 5 Before you start 5 Volcano plots in R: complete script 5 Step-by-step guide to create your volcano plot 9 Step 1: Set up your script 9 Step 2: Get the data ready 9 Step 3: Create a...
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