BiostatCODE
Hands-on coding tutorials with biological data
If you would like to…
- learn data wrangling and visualisation tools for biological data
- start learning code with easy step-by-step guides
- improve your coding skills with R or Python
- learn by doing with hands-on tutorials
Check out Biostatsquid's Youtube videos and tutorials
Data science and biostatistics coding tutorials
Heatmaps with ComplexHeatmap() R tutorial
ComplexHeatmap Tutorial: create publication-ready heatmaps in R ComplexHeatmap Tutorial: create publication-ready heatmaps in R In this easy step-by-step tutorial we will learn how to create and customise a heatmap with R package ComplexHeatmap. ComplexHeatmap is one...
Pathway Enrichment Analysis with clusterProfiler (old version)
Hey! You're looking at an old post. Newer version here: clusterProfiler tutorial in RR TUTORIAL: Perform pathway enrichment analysis with clusterProfiler() in RBefore you start...Welcome to Biostatsquid's easy and step-by-step tutorial on ClusterProfiler! In this...
Easy gene set enrichment analysis with fgsea (old version)
Hey! You're looking at an old post. Newer version here: fgsea tutorial in RA step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgseaIn this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using R-package...
Comparing multiple groups: Kruskal-Wallis test in R
Easy explanation and R tutorial of the Kruskal-Wallis test to compare medians across three or more independent groups when normality assumptions aren’t met.
Introduction to single-cell analysis with Seurat v5
Explore the power of single-cell RNA-seq analysis with Seurat v5 in this hands-on tutorial, guiding you through data preprocessing, clustering, and visualization in R.
How to remove doublets from scRNAseq data
Follow this easy, step-by-step tutorial in R to remove doublets from scRNAseq data.
Easy DoubletFinder tutorial in R
An easy DoubletFinder tutorial in R,with a step-by-step explanation on how to detect doublets in your single-cell RNAseq dataset.
Easy scDblFinder tutorial: doublet detection in R
scDblFinder tutorial – detect and remove doublets with scDblFinder package in R
Easy violin plots tutorial in R with ggplot2
In this tutorial we will learn how to create and customise our own violin plots in R with ggplot2. We will also create our own custom function!
SingleR tutorial: easy cell type annotation
In this easy, step-by-step SingleR tutorial you will learn how to do cell type annotation using SingleR, a reference-based cell type annotation tool.
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