by Biostatsquid | Nov 16, 2023 | Tutorials, Visualisation
In this post, I will show you how to use italics in plots in R. This is very useful when you want to display gene names or species names correctly. You can easily customise your text in R plots to include italics, bold and more! To show you how you can italicize text...
by Biostatsquid | Oct 1, 2023 | Tutorials, Visualisation
Find out some of the best tricks and tips for visualisation in R! Having cool results is one thing, but being able to show those results is another. Choosing the right plot and making it attractive is just as important to get your message across clearly. In this post,...
by Biostatsquid | Sep 4, 2023 | scRNAseq, Statistics in R, Tutorials
A step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgsea In this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using R-package fgsea. This package implements an algorithm for fast gene set enrichment...
by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials
R TUTORIAL: Perform pathway enrichment analysis with clusterProfiler() in R Table of contents 5 Before you start 5 Step-by-step clusterProfiler tutorial 9 Step 0: Set up your script and load the data 9 Step 1: Prepare inputs for clusterProfiler 9 Step 2: Run...
by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials
R TUTORIAL: Visualization of pathway enrichment analysis results with clusterProfiler Table of contents 5 Before you start 5 Step-by-step tutorial 9 Creating an enrichResult object 9 Barplots 9 Dotplots 9 Cnetplot 9 Heatplot 9 Treeplot 9 Enrichment map 9 Upsetplot 5...
by Biostatsquid | May 20, 2023 | Tutorials, Visualisation
R TUTORIAL: Follow this step-by-step heatmap tutorial with pheatmap() to visualise your differential gene expression results in R Table of contents 5 Before you start 5 Heatmaps with pheatmap(): complete script 5 Step-by-step guide to create annotated heatmaps in R 9...
