by Biostatsquid | Mar 11, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial for cell type annotation with SingleR In this easy, step-by-step tutorial you will learn how to to do cell type annotation with the R package SingleR. SingleR is a popular reference-based automatic cell type annotation tool used to...
by Biostatsquid | Dec 17, 2023 | Statistics in R, Tutorials
A step-by-step easy R tutorial for survival analysis, Cox regression and Kaplan-Meier curves In this easy, step-by-step tutorial you will learn how to conduct survival analysis in R, including log rank test, Cox regression, Kaplan-Meier curves, and more! If you are...
by Biostatsquid | Nov 16, 2023 | Tutorials, Visualisation
In this post, I will show you how to use italics in plots in R. This is very useful when you want to display gene names or species names correctly. You can easily customise your text in R plots to include italics, bold and more! To show you how you can italicize text...
by Biostatsquid | Oct 1, 2023 | Tutorials, Visualisation
Find out some of the best tricks and tips for visualisation in R! Having cool results is one thing, but being able to show those results is another. Choosing the right plot and making it attractive is just as important to get your message across clearly. In this post,...
by Biostatsquid | Sep 4, 2023 | scRNAseq, Statistics in R, Tutorials
A step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgsea In this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using R-package fgsea. This package implements an algorithm for fast gene set enrichment...
by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials
R TUTORIAL: Perform pathway enrichment analysis with clusterProfiler() in R Table of contents 5 Before you start 5 Step-by-step clusterProfiler tutorial 9 Step 0: Set up your script and load the data 9 Step 1: Prepare inputs for clusterProfiler 9 Step 2: Run...
