by Biostatsquid | Jul 15, 2025 | scRNAseq, Tutorials
Hey! You’re looking at an old post. Newer version here: fgsea tutorial in R A step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgsea In this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using...
by Biostatsquid | May 5, 2025 | scRNAseq, Tutorials
A step-by-step easy R tutorial to preprocess scRNAseq data with Seurat v5 In this easy, step-by-step tutorial you will learn how a Seurat object is structured and how to preprocess scRNAseq data using the standard workflow with Seurat v5. This is a hands-on...
by Biostatsquid | Aug 25, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets from scRNAseq data In this easy, step-by-step tutorial you will learn how to do some general doublet QC and remove doublets from our Seurat object in R for scRNAseq data. This is part 3 of my tutorial series...
by Biostatsquid | Aug 18, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets using DoubletFinder in R In this easy, step-by-step tutorial you will learn how to detect and remove doublets from scRNAseq data in R, using the R package DoubletFinder. First things first. What are...
by Biostatsquid | Aug 18, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets using scDblFinder in R In this easy, step-by-step scDblFinder tutorial you will learn how to detect and remove doublets from scRNAseq data in R, using the R package (you guessed it!) scDblFinder . First...
by Biostatsquid | Mar 11, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial for cell type annotation with SingleR In this easy, step-by-step tutorial you will learn how to to do cell type annotation with the R package SingleR. SingleR is a popular reference-based automatic cell type annotation tool used to...
