by Biostatsquid | Aug 25, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets from scRNAseq data In this easy, step-by-step tutorial you will learn how to do some general doublet QC and remove doublets from our Seurat object in R for scRNAseq data. This is part 3 of my tutorial series...
by Biostatsquid | Aug 18, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets using DoubletFinder in R In this easy, step-by-step tutorial you will learn how to detect and remove doublets from scRNAseq data in R, using the R package DoubletFinder. First things first. What are...
by Biostatsquid | Aug 18, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial to detect and remove doublets using scDblFinder in R In this easy, step-by-step scDblFinder tutorial you will learn how to detect and remove doublets from scRNAseq data in R, using the R package (you guessed it!) scDblFinder . First...
by Biostatsquid | Mar 11, 2024 | scRNAseq, Tutorials
A step-by-step easy R tutorial for cell type annotation with SingleR In this easy, step-by-step tutorial you will learn how to to do cell type annotation with the R package SingleR. SingleR is a popular reference-based automatic cell type annotation tool used to...
by Biostatsquid | Sep 4, 2023 | scRNAseq, Statistics in R, Tutorials
A step-by-step R tutorial on performing Gene Set Enrichment Analysis with R package fgsea In this tutorial you will learn how to conduct Gene Set Enrichment Analysis (GSEA) using R-package fgsea. This package implements an algorithm for fast gene set enrichment...
by Biostatsquid | Jul 9, 2023 | scRNAseq, Tutorials
R TUTORIAL: Perform pathway enrichment analysis with clusterProfiler() in R Table of contents 5 Before you start 5 Step-by-step clusterProfiler tutorial 9 Step 0: Set up your script and load the data 9 Step 1: Prepare inputs for clusterProfiler 9 Step 2: Run...
